PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026907t3
Common NameTCM_026907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90700.4 Da    PI: 6.1761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026907t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.5e-181977357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Thecc1EG026907t3 19 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                      6789*****************************************************97 PP

2START176.41.7e-551693762204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++
  Thecc1EG026907t3 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIE 260
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++l
  Thecc1EG026907t3 261 LIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVL 353
                       ******************************************99999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++ a+l++ +
  Thecc1EG026907t3 354 RPLYESSKILAQKMTIAALRHIR 376
                       ******************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-19477IPR009057Homeodomain-like
PROSITE profilePS5007115.6941478IPR001356Homeobox domain
SMARTSM003894.4E-151682IPR001356Homeobox domain
PfamPF000464.2E-161977IPR001356Homeobox domain
CDDcd000862.88E-161979No hitNo description
SuperFamilySSF466891.8E-161981IPR009057Homeodomain-like
CDDcd146862.31E-671110No hitNo description
PROSITE profilePS5084826.025159387IPR002913START domain
CDDcd088752.96E-73163379No hitNo description
Gene3DG3DSA:3.30.530.201.6E-23167373IPR023393START-like domain
SMARTSM002342.4E-52168378IPR002913START domain
PfamPF018525.7E-53169376IPR002913START domain
SuperFamilySSF559619.34E-39169380No hitNo description
SuperFamilySSF559611.43E-8416501No hitNo description
SuperFamilySSF559611.43E-8529616No hitNo description
PfamPF086703.3E-28712820IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MALSMHKDSS NNKQMDSSKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LSAMNKLLME ENDRLQKQVS QLVYENGYMR  120
QQLQTGSATT TDNNSCESVV MSGQHQQQQN PTPQHPQRDA NSPAGLLAIA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRPSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT  300
SSTGGPTGPP TSSFVRAEML PSGFLIRPCE GGGSIIHIVD HVDLDVWSVP EVLRPLYESS  360
KILAQKMTIA ALRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFADDGW  420
SLMGSDGVED VTIMINSSPG KFLGSQYNTS MFPSFGGGVL CAKASMLLQN VPPALLVRFL  480
REHRSEWADY GVDTYSAACL KASPYAVPCA RPGGFPSSQV ILPLAHTVEH EEFLEVVRLE  540
GHAFTPEDVA LARDMYLLQL CSGIDENAVG ACAQLVFAPI DESFADDAPL LPSGFRVIPL  600
DPKTVTLTCQ SSADGAGATR TLDLASALEV GPGSNRLAGD GDPSNYNLRS VLTIAFQFTF  660
ENHLRDNVAA MARQYVRSVV GSVQRVAMAI APSRLSSNME PKALPGSPEA LTLARWICRS  720
YRIHTGEELL RVDSQAGDAL LKQLWHHSDA IMCCSLKTNA SPVFTFANQA GLDMLETTLV  780
ALQDIMLDKI LDEAGRKILC SEFSKIMQQV KFSVSGLCSS DIEFFPSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022872.10.0Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A061GEN10.0A0A061GEN1_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]